PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05534.20
Common NameJCGZ_06908, LOC105634596
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 219aa    MW: 24166.6 Da    PI: 8.4094
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05534.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96e-12934227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   +++ C++f++t  CkyG +CkF+H++
  Jcr4S05534.20  9 REPDCPYFLKTKRCKYGLNCKFNHPK 34
                   789*********************96 PP

2zf-CCCH38.22.3e-125882327
                   S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                   ++ C f+++tG Ck+G++CkF+H++
  Jcr4S05534.20 58 EPTCAFYMKTGKCKFGATCKFHHPK 82
                   689********************96 PP

3zf-CCCH39.49.9e-13137160326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    ++ C+f+++tG CkyG++C+++H+
  Jcr4S05534.20 137 EADCPFYLKTGSCKYGATCRYNHP 160
                    789********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.319735IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6734IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9934IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6937IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-51335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0945583IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-55582IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65883IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-105882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-56181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802134162IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10137160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5140159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MESLPERPRE PDCPYFLKTK RCKYGLNCKF NHPKDKLALF QGGSEDNDGF ALPERPSEPT  60
CAFYMKTGKC KFGATCKFHH PKDIQMQFGQ ETNNTVQIGS TVTMEGTTGD FNVVKASISL  120
TPALGHNSKG LPIRLGEADC PFYLKTGSCK YGATCRYNHP DRNAINPPAA AISHPIVANP  180
AANLNIGVIN PAASLYQTID PRLAQPMVWV NICRFQQEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072859.11e-154PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X3
SwissprotQ941Q35e-77C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A067KR251e-152A0A067KR25_JATCU; Uncharacterized protein
STRINGPOPTR_0010s18390.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-78floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]